The problem with simply looking at the difference, or spread, between an issuer's bonds and the risk free rate is that issuers tend to have a lot of different bonds outstanding, each of which could have different prices, and therefore different yields. This means that it's difficult to get an overall, market-based sense of the creditworthiness of an individual issuer looking only to the bond market. This is not the case in the CDS market.
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Without the CDS market, credit quality would be and was a product of subjective models, since we'd have to look at the spreads on the whole spectrum of debt that a given issuer has outstanding, and then use subjective - but not necessarily arbitrary - methods of averaging them. With the CDS market, we have a market-based measure of the credit quality of a wide variety of debt instruments outstanding for a given issuer. This makes the credit quality of an issuer more transparent, not less. Now ask yourself: what kind of issuers does this level of transparency threaten?