Beat me to it. I'll add that Peyton Manning played the first 11 years of his career under defensive-minded coaches, he also turned out OK. Both of his Super Bowl wins were with defensive-minded coaches.
Matt Ryan played practically all of his career under defensive coaches. He may not be the first name that comes to mind as one of the best to play, but he was certainly a franchise QB (that also played in a Super Bowl, losing after building a 28-3 lead).
There are plenty of examples, I think we're biased towards the HC/QB pairing here because of what we saw with Payton/Brees.