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He's been a part of the organization for over a decade. Of course he will be missed on a personal level. Again, you're looking for fire where there ain't no smoke.
There is smoke. Gayle herself interviewed players last week privately. Gayle herself fired Allen. Loomis has been an apologist spokesperson for Allen for 3 years.
Gayle, in the letter saying she made the decision, while Loomis continued excuses for Allen and saying he will be missed should certainly be "eye brow raising".
How many times in the NFL has the owner stepped up, fired a head coach and kept the GM the following season? I bet, its terribly low.